fix: make Codex hooks transactional

AGENTS.md

@@ -29,6 +29,7 @@ This repository owns the published `elydora` package, its CLI, synchronous and a
 - Write Auggie hooks only to `~/.augment/settings.json`; keep system and workspace settings read-only. Generate `.cmd` wrappers on Windows and `.sh` wrappers on Unix because Auggie dispatches supported script paths, and express hook timeouts in milliseconds.
 - Validate Auggie matcher syntax during installation with Node.js `new RegExp`; keep status and uninstall independent from the JavaScript validator so recovery remains available offline.
 - Write Cline hooks only to `$CLINE_DIR/hooks` with `~/.cline/hooks` as the default; keep Documents and workspace hook roots read-only. Preserve official input byte-for-byte, resolve Python runtimes from their absolute shebangs, and translate guard exit code `2` into Cline's JSON stdout cancellation control.
+- Resolve Codex user hooks through `$CODEX_HOME/hooks.json` with `~/.codex/hooks.json` as the default, matching Codex's existing-directory canonicalization rule. Preserve additive user TOML, project, plugin, and managed sources. Register exact `PreToolUse` and `PostToolUse` match-all command groups with ten-second handlers, preserve the complete native payload, propagate freeze and revocation through exit code `2`, keep guard lookup and audit delivery fail-open with observable errors, and commit user hooks plus all four runtime artifacts through one rollback-capable transaction. Require `/hooks` approval for both definition hashes.
 - Write Factory Droid hooks only to user-level `~/.factory/hooks.json`, its active legacy fallback, or the `hooks` object in `~/.factory/settings.json`; keep project and organization sources read-only. Preserve JSONC syntax, select sources per event, store direct event maps in hook files, keep settings hooks nested, validate JavaScript matchers before installation, use exact command ownership, and instruct users to review changes through `/hooks`.
 - Resolve Qwen Code user settings through explicit `QWEN_HOME`, `~/.qwen/.env`, then `~/.env`; keep workspace settings read-only. Preserve comments while rejecting trailing commas and duplicate keys, store hooks under the nested `hooks` object, treat `disableAllHooks` as unhealthy, validate JavaScript matchers before installation, use millisecond timeouts and explicit host shells, preserve PowerShell native exit codes, and instruct users to review changes through `/hooks`.
 
@@ -45,6 +46,7 @@ This repository owns the published `elydora` package, its CLI, synchronous and a
 - Resolve every agent runtime directory as one physical child of `~/.elydora`; reject separators, traversal segments, cross-platform reserved names, symbolic-link directories, and linked identity configs before writes or recursive removal. Validate stored directory identity before changing host CLI configuration, and require an explicit agent ID when discovery is ambiguous.
 - Accept CLI install credentials through hidden terminal input or physical owner-only credential files. Keep credentials out of process arguments, reject legacy secret options with redacted errors, and require one UTF-8 line of at most 64 KiB.
 - Persist the signing key once at `~/.elydora/<agent-id>/private.key` with mode `0600`. Generated audit runtimes read and validate that physical file at execution time.
+- Read runtime config, private keys, status cache, chain state, and error logs through physical-file descriptors with identity checks. Write cache and chain state atomically, and append error logs through no-follow owner-only descriptors.
 - Write runtime secrets, generated scripts, and provider configuration through same-directory temporary files followed by atomic replacement. Surface permission and replacement failures.
 - Interpret `max_retries` as retries after the initial attempt and reject negative or non-integer values.
 - Automatically retry RFC-idempotent methods; retry non-idempotent methods only when the transport proves the request was never sent.