feat(python): durable transaction subsystem and Kiro IDE 1.0 adapter

Land the crash-recoverable managed-file transaction engine (journal,
staging, commit, restart recovery, opaque snapshots, private artifacts,
Windows DACL hardening) and the Kiro IDE 1.0 workspace hook plugin with
legacy migration.

Repair five defects that kept the suite red (426 failures to zero):

- Anchor the transaction state directory at ~/.elydora/transactions
  instead of the shared system temp directory. The recovery journal now
  shares fate with the runtimes it repairs, survives temp cleaners, and
  isolates naturally under per-test fake homes.
- Skip pending-transaction recovery when no state directory exists so
  rejected installs never create runtime directories.
- Create the runtime root's parent before hardening it, matching the Go
  SDK's expand behavior for fresh homes.
- Stop using file timestamps as identity evidence: Windows exposes
  mtime/ctime with delayed cross-handle visibility. Reads now prove
  stability through a verification re-read; snapshots compare device,
  inode, size, and SHA-256.
- Stop comparing synthetic Windows permission bits across stat
  boundaries: path stats derive execute bits from file extensions while
  handle stats do not, which falsely flagged every managed .cmd wrapper.
  Snapshots store raw modes for restoration and compare portable bits.

Reservation cleanup now verifies content before discarding so a
concurrent writer's file at a rollback path is preserved, and the
install-failure tests assert the precise contract: no agent runtime
residue, with the durable state directory allowed to remain.

Gates: pytest 807 passed, mypy clean, pip check clean, wheel builds.

elydora/plugins/_durable_file.py

@@ -0,0 +1,132 @@
+"""Durable, identity-bound file copy and replacement primitives."""
+
+from __future__ import annotations
+
+import os
+import stat
+from typing import Any, Optional, Tuple
+
+from ._pinned_directory import PinnedDirectory
+
+
+_COPY_CHUNK_BYTES = 1024 * 1024
+FileIdentity = Tuple[int, int]
+
+
+def _regular_identity(
+    metadata: os.stat_result,
+    expected: FileIdentity,
+    path: str,
+    label: str,
+) -> None:
+    if (
+        not stat.S_ISREG(metadata.st_mode)
+        or stat.S_ISLNK(metadata.st_mode)
+        or (metadata.st_dev, metadata.st_ino) != expected
+    ):
+        raise OSError(f"{label} changed while copying: {path}")
+
+
+def _stable_metadata(metadata: os.stat_result) -> tuple[int, int, int]:
+    # Timestamps are excluded: Windows exposes file times with delayed
+    # cross-handle visibility, so they are unsound identity evidence.
+    return (
+        metadata.st_dev,
+        metadata.st_ino,
+        metadata.st_size,
+    )
+
+
+def copy_into_reserved(
+    directory: PinnedDirectory,
+    source_path: str,
+    destination_path: str,
+    source_identity: FileIdentity,
+    destination_identity: FileIdentity,
+    mode: int,
+    label: str,
+    maximum_bytes: Optional[int] = None,
+) -> None:
+    """Copy one physical file into an existing private reservation and fsync it."""
+    source_name = directory.name_for(source_path)
+    destination_name = directory.name_for(destination_path)
+    read_flags = os.O_RDONLY | getattr(os, "O_BINARY", 0)
+    read_flags |= getattr(os, "O_CLOEXEC", 0) | getattr(os, "O_NOFOLLOW", 0)
+    write_flags = os.O_WRONLY | getattr(os, "O_BINARY", 0)
+    write_flags |= getattr(os, "O_CLOEXEC", 0) | getattr(os, "O_NOFOLLOW", 0)
+    source_descriptor = -1
+    destination_descriptor = -1
+    try:
+        source_descriptor = directory.open_file(source_name, read_flags)
+        before = os.fstat(source_descriptor)
+        _regular_identity(before, source_identity, source_path, label)
+        destination_descriptor = directory.open_file(destination_name, write_flags)
+        destination = os.fstat(destination_descriptor)
+        _regular_identity(
+            destination,
+            destination_identity,
+            destination_path,
+            f"{label} destination",
+        )
+        os.ftruncate(destination_descriptor, 0)
+        total = 0
+        while True:
+            chunk = os.read(source_descriptor, _COPY_CHUNK_BYTES)
+            if not chunk:
+                break
+            total += len(chunk)
+            if maximum_bytes is not None and total > maximum_bytes:
+                raise ValueError(
+                    f"{label} exceeds {maximum_bytes} bytes: {source_path}"
+                )
+            offset = 0
+            while offset < len(chunk):
+                written = os.write(destination_descriptor, chunk[offset:])
+                if written <= 0:
+                    raise OSError(f"Copy {label} made no progress: {destination_path}")
+                offset += written
+        directory.chmod_descriptor(destination_descriptor, mode)
+        os.fsync(destination_descriptor)
+        after = os.fstat(source_descriptor)
+        if _stable_metadata(after) != _stable_metadata(before):
+            raise OSError(f"{label} changed while copying: {source_path}")
+    finally:
+        for descriptor in (destination_descriptor, source_descriptor):
+            if descriptor >= 0:
+                os.close(descriptor)
+    visible = directory.stat_file(source_name)
+    _regular_identity(visible, source_identity, source_path, label)
+    directory.sync()
+
+
+def atomic_replace(
+    directory: PinnedDirectory,
+    source_path: str,
+    destination_path: str,
+) -> None:
+    """Atomically replace one same-directory name and persist its entry."""
+    if os.name == "nt":
+        import ctypes as ctypes_module
+        from ctypes import wintypes
+
+        ctypes: Any = ctypes_module
+        source = directory.path_for(directory.name_for(source_path))
+        destination = directory.path_for(directory.name_for(destination_path))
+        kernel32 = ctypes.WinDLL("kernel32", use_last_error=True)
+        move = kernel32.MoveFileExW
+        move.argtypes = [wintypes.LPCWSTR, wintypes.LPCWSTR, wintypes.DWORD]
+        move.restype = wintypes.BOOL
+        replace_existing = 0x00000001
+        write_through = 0x00000008
+        if not move(source, destination, replace_existing | write_through):
+            error = ctypes.get_last_error()
+            raise OSError(f"Atomically replace {destination}: {ctypes.WinError(error)}")
+        return
+    directory.replace_file(
+        directory.name_for(source_path),
+        directory.name_for(destination_path),
+    )
+    directory.sync()
+
+
+__all__ = ["atomic_replace", "copy_into_reserved"]