refactor(db): group database domain modules

src/main/skills/auto-assign-on-hire.ts

@@ -72,16 +72,16 @@ export function autoAssignSkillsForHire(
     return { assignedSkillIds: [] };
   }
 
-  const alreadyAssigned = new Set(db.skills.listAgentSkillAssignments(input.agentId));
+  const alreadyAssigned = new Set(db.core.skills.listAgentSkillAssignments(input.agentId));
   const wanted = new Set(categories);
-  const catalogue = db.skills.listCompanySkills(input.companyId);
+  const catalogue = db.core.skills.listCompanySkills(input.companyId);
 
   const assigned: string[] = [];
   for (const skill of catalogue) {
     if (alreadyAssigned.has(skill.id)) continue;
     const category = readBuiltinCategory(skill.metadata);
     if (!category || !wanted.has(category)) continue;
-    db.skills.assignSkillToAgent(input.agentId, skill.id);
+    db.core.skills.assignSkillToAgent(input.agentId, skill.id);
     assigned.push(skill.id);
   }
 

src/main/skills/crud.ts

@@ -23,11 +23,11 @@ export function createSkillCrud({ db, logger, cleanupSkillFiles, parseGitHubUrl
   }
 
   function listForCompany(companyId: string): SkillRecord[] {
-    return db.skills.listCompanySkills(companyId);
+    return db.core.skills.listCompanySkills(companyId);
   }
 
   function getDetail(companyId: string, skillId: string): DesktopResult<SkillRecord> {
-    const skill = db.skills.getCompanySkill(companyId, skillId);
+    const skill = db.core.skills.getCompanySkill(companyId, skillId);
     if (!skill) return fail("not_found", `Skill ${skillId} not found`);
     return ok(skill);
   }
@@ -36,12 +36,12 @@ export function createSkillCrud({ db, logger, cleanupSkillFiles, parseGitHubUrl
     companyId: string,
     skillId: string,
   ): Promise<DesktopResult<void>> {
-    const skill = db.skills.getCompanySkill(companyId, skillId);
+    const skill = db.core.skills.getCompanySkill(companyId, skillId);
     if (!skill) return fail("not_found", `Skill ${skillId} not found`);
 
     try {
       await cleanupSkillFiles(companyId, skill.slug);
-      db.skills.deleteCompanySkill(companyId, skillId);
+      db.core.skills.deleteCompanySkill(companyId, skillId);
       logger.info(`Skill deleted: ${skill.key}`);
       return ok(undefined);
     } catch (err) {
@@ -56,9 +56,9 @@ export function createSkillCrud({ db, logger, cleanupSkillFiles, parseGitHubUrl
     agentId: string,
     skillId: string,
   ): DesktopResult<void> {
-    const skill = db.skills.getCompanySkill(companyId, skillId);
+    const skill = db.core.skills.getCompanySkill(companyId, skillId);
     if (!skill) return fail("not_found", `Skill ${skillId} not found for company`);
-    db.skills.assignSkillToAgent(agentId, skillId);
+    db.core.skills.assignSkillToAgent(agentId, skillId);
     return ok(undefined);
   }
 
@@ -67,7 +67,7 @@ export function createSkillCrud({ db, logger, cleanupSkillFiles, parseGitHubUrl
     agentId: string,
     skillId: string,
   ): DesktopResult<void> {
-    db.skills.removeSkillFromAgent(agentId, skillId);
+    db.core.skills.removeSkillFromAgent(agentId, skillId);
     return ok(undefined);
   }
 
@@ -75,7 +75,7 @@ export function createSkillCrud({ db, logger, cleanupSkillFiles, parseGitHubUrl
     companyId: string,
     skillId: string,
   ): Promise<DesktopResult<SkillUpdateStatus>> {
-    const skill = db.skills.getCompanySkill(companyId, skillId);
+    const skill = db.core.skills.getCompanySkill(companyId, skillId);
     if (!skill) return fail("not_found", `Skill ${skillId} not found`);
 
     if (skill.sourceType !== "github" && skill.sourceType !== "skills_sh") {

src/main/skills/import-github.ts

@@ -155,7 +155,7 @@ export function createGitHubImporter({ db, logger, skillFilesDir }: GitHubImport
 
       await materializeSkillFiles(companyId, rawSlug, ghSkill.markdown, inventory);
 
-      const { isUpdate } = db.skills.upsertCompanySkill({
+      const { isUpdate } = db.core.skills.upsertCompanySkill({
         id: skillId,
         companyId,
         key,

src/main/skills/import-local.ts

@@ -69,7 +69,7 @@ export async function importFromLocal(
     const skillId = randomUUID();
     await materializeSkillFiles(skillFilesDir(companyId, rawSlug), markdown, inventory);
 
-    const { isUpdate } = db.skills.upsertCompanySkill({
+    const { isUpdate } = db.core.skills.upsertCompanySkill({
       id: skillId,
       companyId,
       key,
@@ -121,7 +121,7 @@ export async function importFromLocal(
     const skillId = randomUUID();
     await materializeSkillFiles(skillFilesDir(companyId, rawSlug), markdown, inventory);
 
-    const { isUpdate } = db.skills.upsertCompanySkill({
+    const { isUpdate } = db.core.skills.upsertCompanySkill({
       id: skillId,
       companyId,
       key,

src/main/skills/import-url.ts

@@ -59,7 +59,7 @@ export async function importFromUrl(
   const skillId = randomUUID();
   await materializeSkillFiles(skillFilesDir(companyId, rawSlug), markdown, inventory);
 
-  const { isUpdate } = db.skills.upsertCompanySkill({
+  const { isUpdate } = db.core.skills.upsertCompanySkill({
     id: skillId,
     companyId,
     key,

src/main/skills/runtime.ts

@@ -35,9 +35,9 @@ export function createSkillRuntime({ db, logger, skillsRoot, skillFilesDir, impo
     agentId: string,
     _connectorId: string,
   ): ProjectedSkill[] {
-    const assignedIds = new Set(db.skills.listAgentSkillAssignments(agentId));
+    const assignedIds = new Set(db.core.skills.listAgentSkillAssignments(agentId));
     if (assignedIds.size === 0) return [];
-    const companySkills = db.skills.listCompanySkills(companyId);
+    const companySkills = db.core.skills.listCompanySkills(companyId);
     const skillPaths = companySkills
       .filter((s) => assignedIds.has(s.id))
       .map((s) => skillFilesDir(companyId, s.slug));
@@ -82,7 +82,7 @@ export function createSkillRuntime({ db, logger, skillsRoot, skillFilesDir, impo
       }
     }
 
-    const workspacePaths = db.workspacesMod.listWorkspaceLocalPaths(companyId);
+    const workspacePaths = db.core.workspaces.listWorkspaceLocalPaths(companyId);
     for (const wsPath of workspacePaths) {
       const agentcompanySkillsDir = join(wsPath, ".agentcompany", "skills");
       if (!existsSync(agentcompanySkillsDir)) continue;
@@ -159,12 +159,12 @@ export function createSkillRuntime({ db, logger, skillsRoot, skillFilesDir, impo
         const results = await importFromLocal(companyId, categoryDir);
         for (const result of results) {
           try {
-            const skill = db.skills.getCompanySkill(companyId, result.skillId);
+            const skill = db.core.skills.getCompanySkill(companyId, result.skillId);
             if (skill) {
               const existingMeta = skill.metadata ? JSON.parse(typeof skill.metadata === "string" ? skill.metadata : JSON.stringify(skill.metadata)) : {};
               existingMeta.builtinCategory = category;
               existingMeta.sourceKind = "builtin";
-              db.skills.updateCompanySkillMetadata(companyId, result.skillId, JSON.stringify(existingMeta));
+              db.core.skills.updateCompanySkillMetadata(companyId, result.skillId, JSON.stringify(existingMeta));
             }
           } catch (error) {
             logger.warn(