Codemod db pass-through calls: messages + runs + approvals + company (C1 part 2/3)

Rewrite ~376 call sites for messages, runs, approvalsMod, and company
domains and delete the corresponding pass-through methods on
AppDatabase / AppDatabaseBase. Structural type references
(ReturnType<HandlerDeps["db"]["getRun"]>) and SweepStaleReviewsDeps-style
mocks are updated to route through the owning sub-module.

src/main/worker/entry/crash-recovery.ts

@@ -33,7 +33,7 @@ export function handleWorkerExit(
 
   for (const run of snapshot.runs) {
     if (run.status === "running") {
-      db.finishRun({
+      db.runs.finishRun({
         runId: run.id,
         status: "interrupted",
         summary: "Worker process crashed.",
@@ -119,7 +119,7 @@ export function handleWorkerExit(
         });
       } catch (error) {
         logger.warn(`[worker] Failed to re-enqueue run ${candidate.id}: ${error instanceof Error ? error.message : String(error)}`);
-        db.finishRun({
+        db.runs.finishRun({
           runId: candidate.id,
           status: "interrupted",
           summary: "Could not re-enqueue after worker restart.",

src/main/worker/handlers/run-finished-helpers.ts

@@ -6,13 +6,13 @@ import type { workerMessageSchema } from "../entry/types";
 import type { HandlerContext, HandlerDeps, WorkerMessageEvent } from "./handler-context";
 
 type RunFinishedEvent = Extract<WorkerMessageEvent, { type: "run-finished" }>;
-type RunRecord = ReturnType<HandlerDeps["db"]["getRun"]>;
+type RunRecord = ReturnType<HandlerDeps["db"]["runs"]["getRun"]>;
 type TaskRecord = ReturnType<HandlerDeps["db"]["entityCrud"]["getTask"]>;
 
 export interface RunFinishedContext {
   run: RunRecord;
   task: TaskRecord | null;
-  runOutcome: ReturnType<HandlerDeps["db"]["finishRun"]>;
+  runOutcome: ReturnType<HandlerDeps["db"]["runs"]["finishRun"]>;
 }
 
 export function finalizeRun(
@@ -25,7 +25,7 @@ export function finalizeRun(
 
   let run: RunRecord;
   try {
-    run = db.getRun(event.runId);
+    run = db.runs.getRun(event.runId);
   } catch (error) {
     logger.warn(
       `[finalizeRun] getRun(${event.runId}) failed; run may have been deleted: ${error instanceof Error ? error.message : String(error)}`,
@@ -66,7 +66,7 @@ export function finalizeRun(
   }
 
   leaseRenewalMap.delete(event.runId);
-  const runOutcome = db.finishRun(event);
+  const runOutcome = db.runs.finishRun(event);
   if (run.workspaceId) {
     db.releaseWorkspaceLock(run.workspaceId, run.id);
   }
@@ -350,7 +350,7 @@ function hasUnfinishedTeamBuilding(
     if (activeReports.length > 0) return false;
     const goalCount = db.countActiveGoalsForCompany(companyId);
     if (goalCount === 0) return false;
-    const pendingHires = db
+    const pendingHires = db.approvalsMod
       .listCompanyApprovalsByType(companyId, "hire_agent")
       .filter((a) => a.state === "pending");
     return pendingHires.length === 0;

src/main/worker/handlers/run-log-handler.ts

@@ -16,8 +16,8 @@ export async function handleRunLog(
   const filtered = filterRunLogChunk(event.stream, event.chunk);
   if (filtered === null) return;
 
-  await db.appendRunLog(event.runId, event.stream, filtered);
-  const runState = db.getRunAuthState(event.runId);
+  await db.runs.appendRunLog(event.runId, event.stream, filtered);
+  const runState = db.runs.getRunAuthState(event.runId);
   if (runState) {
     persistRunEvent(db, logger, {
       companyId: runState.companyId,
@@ -36,7 +36,7 @@ export async function handleRunLog(
   const lastRenewal = leaseRenewalMap.get(event.runId) ?? 0;
   if (now - lastRenewal >= LEASE_RENEWAL_INTERVAL_MS) {
     try {
-      const run = db.getRun(event.runId);
+      const run = db.runs.getRun(event.runId);
       if (run.taskId) {
         db.tasks.renewTaskLease(run.taskId, run.id);
       }

src/main/worker/handlers/run-status-handler.ts

@@ -9,8 +9,8 @@ export function handleRunStatus(
 ): void {
   const { db, logger, emitEvent, onRunStarted } = deps;
 
-  const runState = db.getRunAuthState(event.runId);
-  db.markRunStatus(event.runId, event.status, event.message);
+  const runState = db.runs.getRunAuthState(event.runId);
+  db.runs.markRunStatus(event.runId, event.status, event.message);
   if (runState) {
     persistRunEvent(db, logger, {
       companyId: runState.companyId,
@@ -30,7 +30,7 @@ export function handleRunStatus(
     // dispatchRunToWorker before enqueue. Only lease renewal and
     // run-started housekeeping run here.
     try {
-      const run = db.getRun(event.runId);
+      const run = db.runs.getRun(event.runId);
       if (run.taskId) {
         db.tasks.renewTaskLease(run.taskId, run.id);
       }

src/main/worker/observability/run-event-recorder.ts

@@ -22,7 +22,7 @@ export function persistRunEvent(
   input: PersistInput,
 ) {
   try {
-    db.appendRunEvent(input);
+    db.runs.appendRunEvent(input);
   } catch (error) {
     logger.warn(
       `[run-events] Failed to append ${input.eventType} for ${input.runId}: ${