Rewrite ~525 call sites from `db.<method>()` to `db.<module>.<method>()`
for tasks and agents domains (including `getAgent`/`findAgent`/`getTask`
which live on the `entityCrud` field). Delete the corresponding
pass-through methods on AppDatabaseBase. Structural types that narrowed
`db` to a bag of flat methods (CapabilityMatchDb, EscalationDeps,
SweepStaleReviewsDeps) are reshaped to match the new namespace. Internal
callback references inside database.ts/database-base.ts now invoke the
owning module directly (e.g. `this.agents.saveAgent`) rather than the
deleted pass-through.
The codemod lives at scripts/codemod/remove-appdatabase-passthrough.mjs
and filters by owning module + optional explicit method list. It is
idempotent and does not re-rewrite already-namespaced calls.
Consolidate the two runtime messaging modules under src/main/messaging/. Storage stays in database/messages.ts — that is the SQL layer and belongs with the other DB modules; messaging/ covers the dispatch/normalize runtime around it.
- message-dispatch.ts -> messaging/dispatch.ts
- message-normalize.ts -> messaging/normalize.ts
- add messaging/index.ts barrel for future consumers (existing call sites import the concrete module path directly)
- 10 call sites updated across src/main and tests
ZacharyZhang-NY