Keep the vectors beside the atoms instead of rebuilding them per query
The dense leg used to be a pair of files next to the database: a full .npy re-encoded from every atom, re-normalized on every query, and stale the moment anything was ingested. It is now a vec0 table inside the same SQLite file, written in the same transaction as the atom it describes, so a memory is queryable the instant it is remembered. - vector_index.py maintains the table; the writer inserts, the reader never rebuilds. A repair scan (ely-eye build-dense-index) catches what a crash hid, and it is not on the search path. - Ranking stays in the engine; every boundary (closed, retired, not yet true, another holder's private memory, the mounted cartridge) is checked once against the atoms table afterwards. A visibility subquery inside the KNN cost 48.9s on 153,857 vectors; the same check over 200 candidates costs 0.2ms. When the boundaries reject enough candidates the ask widens once, never twice. - The Go mirror and the web panel carry the new status fields. - bench/dense_scale.py and bench/quant_probe.py measure the leg at corpus size; bench/scale_check.py now works on a copy so the frozen baseline stays frozen. Measured on the frozen 165,973-atom corpus. bench/reports/DENSE.md, QUANT.md and SCALE.md carry the numbers and the machine they were taken on. Gates: 285 pytest, ruff clean, pyright 0 on the touched files, go build/vet/test and gofmt clean, frontend build and eslint clean. mypy is 25 findings against the parent's 24: the new one is "Skipping analyzing sqlite_vec: missing library stubs", the same class as the two existing qwen_vl_utils lines, and the repo keeps no type: ignore anywhere.
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@@ -18,7 +18,7 @@ from .cli_common import json_dump
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from .config import Settings
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from .db import Database
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from .describe import DEFERRED, VisionDescriber
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from .embeddings import EmbeddingService
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from .vector_index import VectorIndex
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from .visual_index import VisualIndex
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@@ -73,7 +73,5 @@ def register(app: typer.Typer, settings: Callable[[], Settings]) -> None:
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@app.command("build-dense-index")
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def build_dense_index() -> None:
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"""Encode every atom into the dense index the text retriever falls back to."""
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index = EmbeddingService(settings()).build_index()
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dimensions = int(index.vectors.shape[1]) if index.vectors.size else 0
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typer.echo(json_dump({"atoms": len(index.atom_ids), "dimensions": dimensions}))
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"""Encode the memories the dense index is missing; its vectors live beside the atoms."""
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typer.echo(json_dump(VectorIndex(settings()).sync()))
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