The merged database names a source by content hash (`11089_4f2a...`) while the
frozen sets name the same file by its corpus id, so every arm scored 0.000 until
load_atoms joined atoms through sources.path. It now returns corpus ids and
refuses an atom it cannot trace to a corpus file.
Also fixes found by running the harness:
- merge rebuilt atom_fts from the deduped atoms table; two attempts on one file
left 288,266 fts rows for 165,973 atoms.
- merge accepts the two honest reasons a corpus file has no product source
(500 byte-identical LongMemEval sessions collapse under content hashing, and
12 photos that ONNX Runtime cannot decode) and reports them.
- --arms used action=extend against a non-empty default, so naming two arms ran
seven.
- the dense cache is keyed by the atom set, so a scale-curve subset cannot be
scored with full-corpus vectors.
- write_markdown crashed on a run that covered only some modalities.
ZacharyZhang-NY
a4953335e7